Databases:
PDB - The Protein Database RCSB Worldwide Protein Data Bank (wwPDB) PDB Beta site National Institute of Standards and Technology NCBI - Human Chromosomes and Contigs NCBI - Mouse Chromosomes and Contigs NCBI - GenBank Sequence files NCBI - GenBank Daily Update EMBL - Nucleotide Sequence Database EMBL - Patent Database USPTO - United States Patent and Trademark Office The European Patent Office - Search Pfam - Protein Families Database of Alignments and HMMs
Software:
EMBOSS - European Molecular Biology Open Software Suite HMMER - Profile HMMs for protein sequence analysis Wise2 - Intelligent algorithms for DNA searches SIM4 - Publication , Documentation , Download BLAST - National Center for Biotechnology Information (NCBI) BLAST - Washington University School of Medicine (WashU) FASTA - University of Virginia TINKER - Molecular modeling software EasyChem - chemical drawing software XDrawChem - chemical drawing software WinDrawChem - chemical drawing software JChemPaint - chemical drawing software MOPAC7 - Semi-empirical molecular orbital package Open Babel - Convert coordinate file formats MPQC - Massively Parallel Quantum Chemistry RasMol - Molecular Visualization TAP - Transcript Assembly Program
